2023

Interplay between chromosomal architecture and termination of DNA replication in bacteria.

Goodall DJ, Warecka D, Hawkins M, Rudolph CJ.

Front Microbiol. 2023 Jun 26; 14:1180848.

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2021

Termination of DNA replication at Tus-ter barriers results in under-replication of template DNA.

Jameson KH, Rudolph CJ, Hawkins M

J Biol Chem. 2021 Dec 297(6):101409.

 

A Fork Trap in the Chromosomal Termination Area Is Highly Conserved across All Escherichia coli Phylogenetic Groups.

Goodall DJ, Jameson KH, Hawkins M, Rudolph CJ.

Int J Mol Sci. 2021 Jul 25;22(15):7928.

 

Effectiveness of glass beads for plating cell cultures.

Prusokas A, Hawkins M, Nieduszynski CA, Retkute R.

Phys Rev E. 2021 May 103(5-1):052410.

 

Tetrameric UvrD helicase is located at the E. coli replisome due to frequent replication blocks.

Wollman AJM, Syeda AH, Leech A, Guy C, McGlynn P, Hawkins M, Leake MC

BioRxiv. Feb 2021 doi: https://doi.org/10.1101/2021.02.22.432310

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2019

Direct removal of RNA polymerase barriers to replication by accessory replicative helicases.

Hawkins M, Dimude JU, Howard JAL, Smith AJ, Dillingham MS, Savery NJ, Rudolph CJ, McGlynn P.

Nucleic Acids Res. 2019 Jun 4;47(10):5100-5113.

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2018

Evolution of Genome Architecture in Archaea: Spontaneous Generation of a New Chromosome in Haloferax volcanii.

Ausiannikava D, Mitchell L, Marriott H, Smith V, Hawkins M, Makarova KS, Koonin EV, Nieduszynski CA, Allers T.

Mol Biol Evol. 2018 Aug 35; 8: 1855–868

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Modeling of DNA replication in rapidly growing bacteria with one and two replication origins.

Retkute R, Hawkins M, Rudolph CJ, Nieduszynski CA.

BioRxiv. June 2018

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DNA replication roadblocks caused by Cascade Interference complexes are alleviated by RecG DNA repair helicase.

Killelea T, Hawkins M, Howard JA, McGlynn P, Bolt EL.

RNA Biology. 2018 Apr 16(4):543-548.

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2017

Inhibiting translation elongation can aid genome duplication in Escherichia coli.

Myka KK, Hawkins M, Syeda AH, Gupta MK, Meharg C, Dillingham MS, Savery NJ, Lloyd RG, McGlynn P.

Nucleic Acids Res. 2017 Mar 17;45(5):2571-258 

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2016

Escherichia coli chromosome copy number measurement using flow cytometry analysis. (link to 2022 update)

Hawkins M, Atkinson J, McGlynn P.

Methods Mol Biol. 2016;1431:151-9

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2014

Recombination and replication.

Syeda AH, Hawkins M, McGlynn P.

Cold Spring Harb Perspect Biol. 2014 Oct 23;6(11)                          

 

The dynamics of genome replication using deep sequencing.

Müller CA, Hawkins M, Retkute R, Malla S, Wilson R, Blythe MJ, Nakato R, Komata M, Shirahige K, de Moura AP, Nieduszynski CA.

Nucleic Acids Res. 2014 Jan 42(1):e3 

           

2013

Accelerated growth in the absence of DNA replication origins.

Hawkins M, Malla S, Blythe MJ, Nieduszynski CA, Allers T.                                   

Nature. 2013 Nov 28;503(7477):544-547                    

 

High-resolution replication profiles define the stochastic nature of genome replication initiation and termination.

Hawkins M, Retkute R, Müller CA, Saner N, Tanaka TU, de Moura AP, Nieduszynski CA.

Cell Rep. 2013 Nov 27;5(4):1132-41                            

 

Stochastic association of neighboring replicons creates replication factories in budding yeast.

Saner N, Karschau J, Natsume T, Gierlinski M, Retkute R, Hawkins M, Nieduszynski CA, Blow JJ, de Moura AP, Tanaka TU.

J Cell Biol. 2013 Sep 30;202(7):1001-12                                              

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2010

Mathematical modelling of whole chromosome replication.

de Moura AP, Retkute R, Hawkins M, Nieduszynski CA.

Nucleic Acids Res. 2010 Sep 38(17): 5623–5633                               

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2007

Genetic and physical mapping of DNA replication origins in Haloferax volcanii.          

Norais C, Hawkins M, Hartman AL, Eisen JA, Myllykallio H, Allers T.

PLoS Genet. 2007 May 18;3(5):e77